[AniMov] problem with instalation of adehabitat

Anne Ghisla a.ghisla at gmail.com
Sun Oct 3 17:17:26 CEST 2010


On Sun, Oct 3, 2010 at 4:55 PM,  <blackdaysvk at gmail.com> claviota:
> Ok,
>
> I wrote the command: require(adehabitat), then I obtained message: >
> require(adehabitat)
> Loading required package: adehabitat
> Loading required package: ade4
>
> Attaching package: 'ade4'
>
> The following object(s) are masked from 'package:base':
>
>   within
>
> This package requires ade4 to be installed
>
> Type:
> demo(rastermaps) for demonstration of raster map analysis
> demo(homerange) for demonstration of home-range estimation
> demo(managltraj) for demonstration of animals trajectory management
> demo(analysisltraj) for demonstration of animals trajectory analysis
> demo(nichehs) for demonstration of niche/habitat selection analysis
>
> Loading required package: gpclib
> General Polygon Clipper Library for R (version 1.5-1)
>       Type 'class ? gpc.poly' for help

great, so it works in R.

>
> Then I wrote command to the Python console:
>
> import rpy2 as rpy2
>
> answer from Python:
>
> Pri súšťaní kódu v Pythone nastala chyba:
>
> Traceback (most recent call last):
>  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2110,
> in commandOutput
>   self.appendText(unicode(output))
>  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2057,
> in appendText
>   cursor = self.textCursor()
> RuntimeError: underlying C/C++ object has been deleted

Puzzling. Why is manageR interfering? Try to disable it via Manage
Plugins and rerun the command.
There are already a lot of variables in the problem...

thanks for testing,

regards,
Anne

> Verzia Pythonu:
> 2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]
> QGIS version:
> 1.5.0-Tethys Tethys, 13923M
>
> Cesta k Pythonu: ['C:/PROGRA~1/QUANTU~1/apps/qgis/./python',
> 'C:\\Users\\Vlado/.qgis/python', 'C:\\Users\\Vlado/.qgis/python/plugins',
> 'C:/PROGRA~1/QUANTU~1/apps/qgis/./python/plugins',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\gdal-16\\pymod', 'C:\\Program Files\\Quantum
> GIS Tethys', 'C:\\PROGRA~1\\QUANTU~1\\bin\\python25.zip',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\DLLs',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\plat-win',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\lib-tk',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\bin',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32\\lib',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\Pythonwin',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\wx-2.8-msw-unicode',
> u'C:/Users/Vlado/.qgis//python/plugins',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\python\\plugins\\fTools\\tools',
> '/usr/share/qgis/python', '.']
>
> command import rpy2.robjects as ro
>
> answer:
>
> Pri súšťaní kódu v Pythone nastala chyba:
>
> Traceback (most recent call last):
>  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2110,
> in commandOutput
>   self.appendText(unicode(output))
>  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2057,
> in appendText
>   cursor = self.textCursor()
> RuntimeError: underlying C/C++ object has been deleted
>
> Verzia Pythonu:
> 2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]
>
>
> QGIS version:
> 1.5.0-Tethys Tethys, 13923M
>
> Cesta k Pythonu: ['C:/PROGRA~1/QUANTU~1/apps/qgis/./python',
> 'C:\\Users\\Vlado/.qgis/python', 'C:\\Users\\Vlado/.qgis/python/plugins',
> 'C:/PROGRA~1/QUANTU~1/apps/qgis/./python/plugins',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\gdal-16\\pymod', 'C:\\Program Files\\Quantum
> GIS Tethys', 'C:\\PROGRA~1\\QUANTU~1\\bin\\python25.zip',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\DLLs',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\plat-win',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\lib-tk',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\bin',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32\\lib',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\Pythonwin',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\wx-2.8-msw-unicode',
> u'C:/Users/Vlado/.qgis//python/plugins',
> 'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\python\\plugins\\fTools\\tools',
> '/usr/share/qgis/python', '.']
>
>
> Vlado
>
> ----- Original Message ----- From: "Anne Ghisla" <a.ghisla at gmail.com>
> To: <blackdaysvk at gmail.com>
> Cc: "Animal Movement" <animov at faunalia.it>
> Sent: Sunday, October 03, 2010 4:14 PM
> Subject: Re: [AniMov] problem with instalation of adehabitat
>
>
>> On Sun, Oct 3, 2010 at 3:50 PM,  <blackdaysvk at gmail.com> wrote:
>>>
>>> Hi Anne,
>>>
>>> sorry, but I forgot send information about my system... System:
>>>
>>> - Windows Vista - OS
>>>>
>>>> - QGIS version - 1.5.0 Tethys
>>>> - how did you install QGIS - standalone installer
>>>> - R version - 2.11.1
>>>> - adehabitat version: see - I dont know... But I install adehabitat from
>>>> Slovakia server via R - install packages
>>>> - Python version - I installed Python 3.1.2 program
>>>
>>> Please help me with this installation, I use Arcview 3 with Animal
>>> Movement
>>> extension for analyses, but I prefer opensource solution ... :-)
>>
>> R 2.11 and Python 3. are untested so far; actually, the standalone
>> QGIS carries its own Python so there is no problem on this side.
>>
>> you can test this code into R console:
>>
>> require(adehabitat)
>>
>> and see if it loads the package correctly.
>>
>> If it doesn't, it's a R/adehabitat issue. Please post details (see
>> sessionInfo() function )
>> If R loads adehabitat, pass to QGIS Python Console (last item in
>> Plugins menu) and type:
>>
>> import rpy2 as rpy2
>> import rpy2.robjects as ro
>> print ro.r.require('adehabitat')
>>
>> let us know if there are any errors there. If so, please post the
>> error messages.
>>
>> regards,
>> Anne
>>
>>> Best wishes,
>>>
>>> Vlado Nemcek
>>>
>>>
>>> ----- Original Message ----- From: "Anne Ghisla" <a.ghisla at gmail.com>
>>> To: <blackdaysvk at gmail.com>; "Animal Movement" <animov at faunalia.it>
>>> Sent: Sunday, October 03, 2010 12:15 PM
>>> Subject: Re: [AniMov] problem with instalation of adehabitat
>>>
>>>
>>>> On Sat, 2010-10-02 at 17:06 +0200, blackdaysvk at gmail.com wrote:
>>>>>
>>>>> Dear users of quantum GIS,
>>>>>
>>>>> I have a problem with installation of adehabitat on my computer. I
>>>>> download and install animove and R to the PC. But when I want
>>>>> calculate the MCP or kernel polygon, then my PC put up the message -
>>>>>
>>>>> R error (please consult its documentation) is:
>>>>>
>>>>> Error in function (x, method = c("mcp", "href", "lscv", "hadj",
>>>>> "clusthr", :
>>>>>
>>>>> This procedure requires adehabitat to be installed
>>>>>
>>>>>
>>>>>
>>>>> But I have R and adehabitat - I install and download adehabitat from
>>>>> server with R... Please can you write me detailed installation of
>>>>> adehabitat - step by step...
>>>>
>>>> Hi Vlado,
>>>>
>>>> we would help you right now but you didn't tell us:
>>>> - your operating system
>>>> - QGIS version
>>>> - how did you install QGIS (source, binary package, OSGeo4W, standalone)
>>>> - R version
>>>> - adehabitat version: see
>>>> http://lists.faunalia.it/pipermail/animov/2010-September/000674.html
>>>> - Python version
>>>>
>>>> that is important, each platform has its own answers:
>>>>
>>>>
>>>>
>>>> http://www.qgis.org/wiki/HomeRange_plugin#Installation_requirements_and_tested_platforms
>>>>
>>>> There are plenty of installation notes in the wiki and in the archives
>>>> of this mailing list. Of course if your problem is not covered, send the
>>>> list a mail with the details listed above, or better fill a ticket into
>>>>
>>>> https://www.faunalia.it/animove/trac/
>>>>
>>>> regards,
>>>> anne
>>>> --
>>>> http://wiki.osgeo.org/wiki/Anne_Ghisla
>>>
>>>
>> --
>> http://gis.fem-environment.eu/anne-ghisla/
>
>



-- 
http://gis.fem-environment.eu/anne-ghisla/


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