[AniMov] problem with instalation of adehabitat

blackdaysvk at gmail.com blackdaysvk at gmail.com
Sun Oct 3 16:55:14 CEST 2010


Ok,

I wrote the command: require(adehabitat), then I obtained message: > 
require(adehabitat)
Loading required package: adehabitat
Loading required package: ade4

Attaching package: 'ade4'

The following object(s) are masked from 'package:base':

    within

This package requires ade4 to be installed

Type:
demo(rastermaps) for demonstration of raster map analysis
demo(homerange) for demonstration of home-range estimation
demo(managltraj) for demonstration of animals trajectory management
demo(analysisltraj) for demonstration of animals trajectory analysis
demo(nichehs) for demonstration of niche/habitat selection analysis

Loading required package: gpclib
General Polygon Clipper Library for R (version 1.5-1)
        Type 'class ? gpc.poly' for help

Then I wrote command to the Python console:

import rpy2 as rpy2

answer from Python:

Pri súšťaní kódu v Pythone nastala chyba:

Traceback (most recent call last):
  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2110, 
in commandOutput
    self.appendText(unicode(output))
  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2057, 
in appendText
    cursor = self.textCursor()
RuntimeError: underlying C/C++ object has been deleted

Verzia Pythonu:
2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]


QGIS version:
1.5.0-Tethys Tethys, 13923M

Cesta k Pythonu: ['C:/PROGRA~1/QUANTU~1/apps/qgis/./python', 
'C:\\Users\\Vlado/.qgis/python', 'C:\\Users\\Vlado/.qgis/python/plugins', 
'C:/PROGRA~1/QUANTU~1/apps/qgis/./python/plugins', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\gdal-16\\pymod', 'C:\\Program Files\\Quantum 
GIS Tethys', 'C:\\PROGRA~1\\QUANTU~1\\bin\\python25.zip', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\DLLs', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\plat-win', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\lib-tk', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\bin', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32\\lib', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\Pythonwin', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\wx-2.8-msw-unicode', 
u'C:/Users/Vlado/.qgis//python/plugins', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\python\\plugins\\fTools\\tools', 
'/usr/share/qgis/python', '.']

command import rpy2.robjects as ro

answer:

Pri súšťaní kódu v Pythone nastala chyba:

Traceback (most recent call last):
  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2110, 
in commandOutput
    self.appendText(unicode(output))
  File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2057, 
in appendText
    cursor = self.textCursor()
RuntimeError: underlying C/C++ object has been deleted

Verzia Pythonu:
2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]


QGIS version:
1.5.0-Tethys Tethys, 13923M

Cesta k Pythonu: ['C:/PROGRA~1/QUANTU~1/apps/qgis/./python', 
'C:\\Users\\Vlado/.qgis/python', 'C:\\Users\\Vlado/.qgis/python/plugins', 
'C:/PROGRA~1/QUANTU~1/apps/qgis/./python/plugins', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\gdal-16\\pymod', 'C:\\Program Files\\Quantum 
GIS Tethys', 'C:\\PROGRA~1\\QUANTU~1\\bin\\python25.zip', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\DLLs', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\plat-win', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\lib-tk', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\bin', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32\\lib', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\Pythonwin', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\wx-2.8-msw-unicode', 
u'C:/Users/Vlado/.qgis//python/plugins', 
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\python\\plugins\\fTools\\tools', 
'/usr/share/qgis/python', '.']


Vlado

----- Original Message ----- 
From: "Anne Ghisla" <a.ghisla at gmail.com>
To: <blackdaysvk at gmail.com>
Cc: "Animal Movement" <animov at faunalia.it>
Sent: Sunday, October 03, 2010 4:14 PM
Subject: Re: [AniMov] problem with instalation of adehabitat


> On Sun, Oct 3, 2010 at 3:50 PM,  <blackdaysvk at gmail.com> wrote:
>> Hi Anne,
>>
>> sorry, but I forgot send information about my system... System:
>>
>> - Windows Vista - OS
>>>
>>> - QGIS version - 1.5.0 Tethys
>>> - how did you install QGIS - standalone installer
>>> - R version - 2.11.1
>>> - adehabitat version: see - I dont know... But I install adehabitat from
>>> Slovakia server via R - install packages
>>> - Python version - I installed Python 3.1.2 program
>>
>> Please help me with this installation, I use Arcview 3 with Animal 
>> Movement
>> extension for analyses, but I prefer opensource solution ... :-)
>
> R 2.11 and Python 3. are untested so far; actually, the standalone
> QGIS carries its own Python so there is no problem on this side.
>
> you can test this code into R console:
>
> require(adehabitat)
>
> and see if it loads the package correctly.
>
> If it doesn't, it's a R/adehabitat issue. Please post details (see
> sessionInfo() function )
> If R loads adehabitat, pass to QGIS Python Console (last item in
> Plugins menu) and type:
>
> import rpy2 as rpy2
> import rpy2.robjects as ro
> print ro.r.require('adehabitat')
>
> let us know if there are any errors there. If so, please post the
> error messages.
>
> regards,
> Anne
>
>> Best wishes,
>>
>> Vlado Nemcek
>>
>>
>> ----- Original Message ----- From: "Anne Ghisla" <a.ghisla at gmail.com>
>> To: <blackdaysvk at gmail.com>; "Animal Movement" <animov at faunalia.it>
>> Sent: Sunday, October 03, 2010 12:15 PM
>> Subject: Re: [AniMov] problem with instalation of adehabitat
>>
>>
>>> On Sat, 2010-10-02 at 17:06 +0200, blackdaysvk at gmail.com wrote:
>>>>
>>>> Dear users of quantum GIS,
>>>>
>>>> I have a problem with installation of adehabitat on my computer. I
>>>> download and install animove and R to the PC. But when I want
>>>> calculate the MCP or kernel polygon, then my PC put up the message -
>>>>
>>>> R error (please consult its documentation) is:
>>>>
>>>> Error in function (x, method = c("mcp", "href", "lscv", "hadj",
>>>> "clusthr", :
>>>>
>>>> This procedure requires adehabitat to be installed
>>>>
>>>>
>>>>
>>>> But I have R and adehabitat - I install and download adehabitat from
>>>> server with R... Please can you write me detailed installation of
>>>> adehabitat - step by step...
>>>
>>> Hi Vlado,
>>>
>>> we would help you right now but you didn't tell us:
>>> - your operating system
>>> - QGIS version
>>> - how did you install QGIS (source, binary package, OSGeo4W, standalone)
>>> - R version
>>> - adehabitat version: see
>>> http://lists.faunalia.it/pipermail/animov/2010-September/000674.html
>>> - Python version
>>>
>>> that is important, each platform has its own answers:
>>>
>>>
>>> http://www.qgis.org/wiki/HomeRange_plugin#Installation_requirements_and_tested_platforms
>>>
>>> There are plenty of installation notes in the wiki and in the archives
>>> of this mailing list. Of course if your problem is not covered, send the
>>> list a mail with the details listed above, or better fill a ticket into
>>>
>>> https://www.faunalia.it/animove/trac/
>>>
>>> regards,
>>> anne
>>> --
>>> http://wiki.osgeo.org/wiki/Anne_Ghisla
>>
>>
> -- 
> http://gis.fem-environment.eu/anne-ghisla/ 



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